Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284497-SRR8284498/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  239,283,034
 Normal Paired: 225,126,790 (94.08%)
 Chimeric Paired: 9,404,571 (3.93%)
 Chimeric Ambiguous: 3,410,066 (1.43%)
 Unmapped: 1,341,607 (0.56%)
 Ligation Motif Present: 76,985 (0.03%)
Alignable (Normal+Chimeric Paired): 234,531,361 (98.01%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-25T00:38:05,600]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 112,495,332 (47.01%)
PCR Duplicates: 122,036,029 (51.00%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 137,444,909
Intra-fragment Reads: 55,557,725 (23.22% / 49.39%)
Below MAPQ Threshold: 23,016,695 (9.62% / 20.46%)
Hi-C Contacts: 33,920,912 (14.18% / 30.15%)
 Ligation Motif Present: 22,146  (0.01% / 0.02%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,248,860  (2.19% / 4.67%)
Intra-chromosomal: 28,672,052  (11.98% / 25.49%)
Short Range (<20Kb): 19,565,279  (8.18% / 17.39%)
Long Range (>20Kb): 9,106,673  (3.81% / 8.10%)